Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099831
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 842
                    [wgsID] => 525
                    [fwdFile] => BE_41351_R1.fastq.gz
                    [fwdMd5] => 2a0fc72f2db57dc2b1d12e3de1a5a704
                    [revFile] => BE_41351_R2.fastq.gz
                    [revMd5] => 029bfd780f97233d6935912c8a0c7293
                    [rawReads] => 1048446522
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611259
                    [enaRun] => ERR14209039
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1709
                    [wgsID] => 525
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-12-24 09:46:41
                    [dateCompleted] => 2024-12-25 09:11:34
                    [bamMd5] => 902e8f435438dfb10e4aabd1745d7eb1
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 836514415
                    [primaryReads] => 827423439
                    [mappedReads] => 835315853
                    [primaryMapped] => 826224877
                    [pairedReads] => 811891490
                    [meanInsertSize] => 376.23
                    [meanReadDepth] => 34.06
                    [variantsCalled] => 6177146
                    [variantsFiltered] => 5882683
                    [snpCount] => 4150462
                    [snpHom] => 1963166
                    [snpHet] => 2187296
                    [indelCount] => 1741161
                    [insHom] => 354040
                    [delHom] => 477497
                    [insHet] => 425150
                    [delHet] => 519148
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759318
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759318/BE_41351-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242