Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099831
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 842
[wgsID] => 525
[fwdFile] => BE_41351_R1.fastq.gz
[fwdMd5] => 2a0fc72f2db57dc2b1d12e3de1a5a704
[revFile] => BE_41351_R2.fastq.gz
[revMd5] => 029bfd780f97233d6935912c8a0c7293
[rawReads] => 1048446522
[FastqRCS] => 1
[enaExperiment] => ERX13611259
[enaRun] => ERR14209039
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1709
[wgsID] => 525
[refGenome] => cf4
[dateSubmitted] => 2024-12-24 09:46:41
[dateCompleted] => 2024-12-25 09:11:34
[bamMd5] => 902e8f435438dfb10e4aabd1745d7eb1
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 836514415
[primaryReads] => 827423439
[mappedReads] => 835315853
[primaryMapped] => 826224877
[pairedReads] => 811891490
[meanInsertSize] => 376.23
[meanReadDepth] => 34.06
[variantsCalled] => 6177146
[variantsFiltered] => 5882683
[snpCount] => 4150462
[snpHom] => 1963166
[snpHet] => 2187296
[indelCount] => 1741161
[insHom] => 354040
[delHom] => 477497
[insHet] => 425150
[delHet] => 519148
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ25759318
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759318/BE_41351-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242