Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099832
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 843
[wgsID] => 526
[fwdFile] => BE_41369_R1.fastq.gz
[fwdMd5] => ef225e9b7af7d180fb69fccba2cc48a3
[revFile] => BE_41369_R2.fastq.gz
[revMd5] => 92190fc68ab551438aa81b2689a51131
[rawReads] => 1166574304
[FastqRCS] => 1
[enaExperiment] => ERX13611260
[enaRun] => ERR14209040
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1710
[wgsID] => 526
[refGenome] => cf4
[dateSubmitted] => 2024-12-24 09:47:09
[dateCompleted] => 2024-12-25 08:44:10
[bamMd5] => 14719e06bf20c7f7ceffd53fd4fd3181
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 849505205
[primaryReads] => 837491666
[mappedReads] => 848387815
[primaryMapped] => 836374276
[pairedReads] => 821886304
[meanInsertSize] => 346.19
[meanReadDepth] => 34.05
[variantsCalled] => 6267418
[variantsFiltered] => 5975296
[snpCount] => 4221094
[snpHom] => 1868882
[snpHet] => 2352212
[indelCount] => 1763818
[insHom] => 336190
[delHom] => 458323
[insHet] => 454598
[delHet] => 551468
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ25759317
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759317/BE_41369-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242