Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099845
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 856
[wgsID] => 539
[fwdFile] => BE_41483_R1.fastq.gz
[fwdMd5] => fce0102d098c6b7c95db381ca50aeb9f
[revFile] => BE_41483_R2.fastq.gz
[revMd5] => c8720adfb9e5e1d07e7706211d0eee9d
[rawReads] => 1022274498
[FastqRCS] => 1
[enaExperiment] => ERX13611262
[enaRun] => ERR14209042
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1747
[wgsID] => 539
[refGenome] => cf4
[dateSubmitted] => 2025-01-10 13:42:34
[dateCompleted] => 2025-01-11 10:18:20
[bamMd5] => 2b4c93932ff6adab24224cbdcf8a1b28
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 864394124
[primaryReads] => 857063903
[mappedReads] => 863382098
[primaryMapped] => 856051877
[pairedReads] => 841809962
[meanInsertSize] => 392.23
[meanReadDepth] => 33.98
[variantsCalled] => 6555644
[variantsFiltered] => 6261510
[snpCount] => 4435653
[snpHom] => 1683998
[snpHet] => 2751655
[indelCount] => 1836923
[insHom] => 296366
[delHom] => 409336
[insHet] => 529256
[delHet] => 644678
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ25759330
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759330/BE_41483-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242