Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189955
[wgsExptID] => 2
[Batch] => Oxford_1
[SeqLaboratory] => Wellcome Trust Centre for Human Genetics
[Platform] => Illumina
[InstrumentModel] => HiSeq 1000
[ReadType] =>
[LibraryPrep] => Fragmentase, NEBnext ultra, 4x amp
[PcrFree] => N
[SampleCount] => 1
[DateSubmitted] =>
[FastqID] => 449
[wgsID] => 87
[fwdFile] => BGVP_17289_R1.fastq.gz
[fwdMd5] => d541e502f055365624c8d9a5cb397db9
[revFile] => BGVP_17289_R2.fastq.gz
[revMd5] => bd39c01d4e2256efb8821d3816479ace
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10158676
[enaRun] => ERR10691969
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 270
[wgsID] => 87
[refGenome] => cf4
[dateSubmitted] => 2023-02-06 09:47:00
[dateCompleted] => 2023-02-06 22:18:00
[bamMd5] => 8b7231f47864f81c658f57429ab08d45
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 721849971
[primaryReads] =>
[mappedReads] => 719160795
[primaryMapped] =>
[pairedReads] => 646400324
[meanInsertSize] => 197.75
[meanReadDepth] => 23.24
[variantsCalled] => 5653988
[variantsFiltered] => 5388836
[snpCount] => 3962804
[snpHom] =>
[snpHet] =>
[indelCount] => 1431415
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21790188
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21790188/BGV_P_17289-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242