Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190197
                    [wgsExptID] => 11
                    [Batch] => Edinburgh_1
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 6
                    [DateSubmitted] => 
                    [FastqID] => 480
                    [wgsID] => 128
                    [fwdFile] => BGV_P_29686_R1.fastq.gz
                    [fwdMd5] => 6ee095d30a40cd631c94acdf3b4771f8
                    [revFile] => BGV_P_29686_R2.fastq.gz
                    [revMd5] => e4daf7634b9be33ea15c80abf53d1f6d
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10810958
                    [enaRun] => ERR11403167
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 301
                    [wgsID] => 128
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-02-15 11:51:00
                    [dateCompleted] => 2023-02-16 07:33:00
                    [bamMd5] => 59edc94bfe0e80c82adba10bee1217af
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1005392641
                    [primaryReads] => 
                    [mappedReads] => 1003997468
                    [primaryMapped] => 
                    [pairedReads] => 984518668
                    [meanInsertSize] => 514.25
                    [meanReadDepth] => 50.61
                    [variantsCalled] => 6578661
                    [variantsFiltered] => 6169411
                    [snpCount] => 4296020
                    [snpHom] => 
                    [snpHet] => 
                    [indelCount] => 1885645
                    [insHom] => 
                    [delHom] => 
                    [insHet] => 
                    [delHet] => 
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21789637
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21789637/BGV_P_29686-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242