Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190157
                    [wgsExptID] => 14
                    [Batch] => Edinburgh_4
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 13
                    [DateSubmitted] => 
                    [FastqID] => 140
                    [wgsID] => 235
                    [fwdFile] => BH_32591_R1.fastq.gz
                    [fwdMd5] => a876acb7f22368d4df5ddaa5ae035b86
                    [revFile] => BH_32591_R2.fastq.gz
                    [revMd5] => cd87ad248ff8afbbfcb816122e3a81f0
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10679338
                    [enaRun] => ERR11271768
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 379
                    [wgsID] => 235
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-03-22 11:09:00
                    [dateCompleted] => 2023-03-23 05:31:00
                    [bamMd5] => 7c7aaa4071bc2b6655fbba44a7592b48
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 942560541
                    [primaryReads] => 
                    [mappedReads] => 939954310
                    [primaryMapped] => 
                    [pairedReads] => 920134146
                    [meanInsertSize] => 420.96
                    [meanReadDepth] => 33.14
                    [variantsCalled] => 5835201
                    [variantsFiltered] => 5532348
                    [snpCount] => 3854132
                    [snpHom] => 2236351
                    [snpHet] => 1617781
                    [indelCount] => 1686142
                    [insHom] => 374095
                    [delHom] => 505709
                    [insHet] => 374100
                    [delHet] => 459149
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21517641
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ215/ERZ21517641/BH_32591-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242