Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190157
[wgsExptID] => 14
[Batch] => Edinburgh_4
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 13
[DateSubmitted] =>
[FastqID] => 140
[wgsID] => 235
[fwdFile] => BH_32591_R1.fastq.gz
[fwdMd5] => a876acb7f22368d4df5ddaa5ae035b86
[revFile] => BH_32591_R2.fastq.gz
[revMd5] => cd87ad248ff8afbbfcb816122e3a81f0
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10679338
[enaRun] => ERR11271768
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 379
[wgsID] => 235
[refGenome] => cf4
[dateSubmitted] => 2023-03-22 11:09:00
[dateCompleted] => 2023-03-23 05:31:00
[bamMd5] => 7c7aaa4071bc2b6655fbba44a7592b48
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 942560541
[primaryReads] =>
[mappedReads] => 939954310
[primaryMapped] =>
[pairedReads] => 920134146
[meanInsertSize] => 420.96
[meanReadDepth] => 33.14
[variantsCalled] => 5835201
[variantsFiltered] => 5532348
[snpCount] => 3854132
[snpHom] => 2236351
[snpHet] => 1617781
[indelCount] => 1686142
[insHom] => 374095
[delHom] => 505709
[insHet] => 374100
[delHet] => 459149
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21517641
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ215/ERZ21517641/BH_32591-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242