Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190183
[wgsExptID] => 17
[Batch] => Edinburgh_7
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 19
[DateSubmitted] =>
[FastqID] => 146
[wgsID] => 278
[fwdFile] => BoT_33834_R1.fastq.gz
[fwdMd5] => 59864704c442caf0e0c24ad4edc8bb4b
[revFile] => BoT_33834_R2.fastq.gz
[revMd5] => bf0c5f75339240ac868c3ec7da4e8d8b
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10665928
[enaRun] => ERR11257719
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 54
[wgsID] => 278
[refGenome] => cf4
[dateSubmitted] => 2022-02-11 11:11:00
[dateCompleted] => 2023-03-30 09:42:00
[bamMd5] => c16152d4c5d993b8bdec602b3a9d4290
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 896296412
[primaryReads] =>
[mappedReads] => 885975160
[primaryMapped] =>
[pairedReads] => 866833530
[meanInsertSize] => 500.49
[meanReadDepth] => 45.23
[variantsCalled] => 6225045
[variantsFiltered] => 5853576
[snpCount] => 4083311
[snpHom] => 2009883
[snpHet] => 2073428
[indelCount] => 1780400
[insHom] => 325688
[delHom] => 447111
[insHet] => 471127
[delHet] => 572870
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21780957
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780957/BoT_33834-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242