Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA111329081
[wgsExptID] => 24
[Batch] => CRUKCI_2
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => In house, Illumina DNA PCR-Free Prep, Tagmentation
[PcrFree] => Y
[SampleCount] => 2
[DateSubmitted] => 2022-02-03
[FastqID] => 647
[wgsID] => 33
[fwdFile] => BoT_37630_R1.fastq.gz
[fwdMd5] => b83ad294d335e198b5f7a809bb7efdc6
[revFile] => BoT_37630_R2.fastq.gz
[revMd5] => 72e142cde6d72da8ce0f0a7df2ef66a2
[rawReads] => 917893860
[FastqRCS] => 1
[enaExperiment] => ERX10830392
[enaRun] => ERR11423084
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 46
[wgsID] => 33
[refGenome] => cf4
[dateSubmitted] => 2023-07-06 10:26:00
[dateCompleted] => 2023-07-07 08:11:00
[bamMd5] => 5824667f76096729e38df9433d73345e
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 786143988
[primaryReads] =>
[mappedReads] => 783055906
[primaryMapped] =>
[pairedReads] => 765108252
[meanInsertSize] => 469.43
[meanReadDepth] => 37.71
[variantsCalled] => 6176181
[variantsFiltered] => 5853131
[snpCount] => 4082392
[snpHom] => 2021106
[snpHet] => 2061286
[indelCount] => 1779949
[insHom] => 377024
[delHom] => 505110
[insHet] => 429697
[delHet] => 506298
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21659507
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659507/BoT_37630-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242