Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA111329081
                    [wgsExptID] => 24
                    [Batch] => CRUKCI_2
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => In house, Illumina DNA PCR-Free Prep, Tagmentation
                    [PcrFree] => Y
                    [SampleCount] => 2
                    [DateSubmitted] => 2022-02-03
                    [FastqID] => 647
                    [wgsID] => 33
                    [fwdFile] => BoT_37630_R1.fastq.gz
                    [fwdMd5] => b83ad294d335e198b5f7a809bb7efdc6
                    [revFile] => BoT_37630_R2.fastq.gz
                    [revMd5] => 72e142cde6d72da8ce0f0a7df2ef66a2
                    [rawReads] => 917893860
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10830392
                    [enaRun] => ERR11423084
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 46
                    [wgsID] => 33
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-07-06 10:26:00
                    [dateCompleted] => 2023-07-07 08:11:00
                    [bamMd5] => 5824667f76096729e38df9433d73345e
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 786143988
                    [primaryReads] => 
                    [mappedReads] => 783055906
                    [primaryMapped] => 
                    [pairedReads] => 765108252
                    [meanInsertSize] => 469.43
                    [meanReadDepth] => 37.71
                    [variantsCalled] => 6176181
                    [variantsFiltered] => 5853131
                    [snpCount] => 4082392
                    [snpHom] => 2021106
                    [snpHet] => 2061286
                    [indelCount] => 1779949
                    [insHom] => 377024
                    [delHom] => 505110
                    [insHet] => 429697
                    [delHet] => 506298
                    [genomicsDB] => cf4-terrier
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659507
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659507/BoT_37630-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242