Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721122
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 597
[wgsID] => 374
[fwdFile] => BOZ_38007_R1.fastq.gz
[fwdMd5] => 2e433ce489a02e7687fcf1d5835d6e51
[revFile] => BOZ_38007_R2.fastq.gz
[revMd5] => 878f123d400439075f0ac5eb798c2d56
[rawReads] => 815525036
[FastqRCS] => 1
[enaExperiment] => ERX10632436
[enaRun] => ERR11203052
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 816
[wgsID] => 374
[refGenome] => cf4
[dateSubmitted] => 2023-06-20 10:01:00
[dateCompleted] => 2023-06-21 01:32:00
[bamMd5] => d341e7d16fea9d0a88c328ee76993819
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 792961007
[primaryReads] =>
[mappedReads] => 792147911
[primaryMapped] =>
[pairedReads] => 766594264
[meanInsertSize] => 367.18
[meanReadDepth] => 37.98
[variantsCalled] => 6535619
[variantsFiltered] => 6194757
[snpCount] => 4344118
[snpHom] => 1836582
[snpHet] => 2507536
[indelCount] => 1862047
[insHom] => 295180
[delHom] => 414469
[insHet] => 539238
[delHet] => 655446
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21817121
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817121/BOZ_38007-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242