Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190211
[wgsExptID] => 12
[Batch] => Edinburgh_2
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 36
[DateSubmitted] =>
[FastqID] => 147
[wgsID] => 144
[fwdFile] => BP_28016_R1.fastq.gz
[fwdMd5] => 8aa773f91fedc9cc91a32d293cdb69c7
[revFile] => BP_28016_R2.fastq.gz
[revMd5] => 540a0176502dbf1eb32ac4c36c92739d
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10686607
[enaRun] => ERR11278907
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 235
[wgsID] => 144
[refGenome] => cf4
[dateSubmitted] => 2022-11-07 11:29:00
[dateCompleted] => 2022-11-08 04:59:00
[bamMd5] => 0d3f99fa0e1a08496908581fd66e4ccc
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1016503145
[primaryReads] =>
[mappedReads] => 840629673
[primaryMapped] =>
[pairedReads] => 824046890
[meanInsertSize] => 422.83
[meanReadDepth] => 37.71
[variantsCalled] => 5584921
[variantsFiltered] => 5232124
[snpCount] => 3604320
[snpHom] =>
[snpHet] =>
[indelCount] => 1636087
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21782991
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782991/BP_28016-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242