Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190233
[wgsExptID] => 13
[Batch] => Edinburgh_3
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 26
[DateSubmitted] =>
[FastqID] => 148
[wgsID] => 204
[fwdFile] => BR_32256_R1.fastq.gz
[fwdMd5] => 61bb01efdd5110741de70e3061f04481
[revFile] => BR_32256_R2.fastq.gz
[revMd5] => 8f072e9542bd84f888a68ba7f220e1ae
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10682124
[enaRun] => ERR11274554
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 244
[wgsID] => 204
[refGenome] => cf4
[dateSubmitted] => 2022-11-08 12:39:00
[dateCompleted] => 2022-11-09 06:27:00
[bamMd5] => 587bb7a56744ca6b2d4f9211d0441feb
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 973564419
[primaryReads] =>
[mappedReads] => 935031777
[primaryMapped] =>
[pairedReads] => 917070570
[meanInsertSize] => 445.79
[meanReadDepth] => 45.48
[variantsCalled] => 6024711
[variantsFiltered] => 5672900
[snpCount] => 3946001
[snpHom] => 2030767
[snpHet] => 1915234
[indelCount] => 1736252
[insHom] => 325018
[delHom] => 454576
[insHet] => 445842
[delHet] => 543524
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21375570
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375570/BR_32256-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242