Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190165
                    [wgsExptID] => 15
                    [Batch] => Edinburgh_5
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 5
                    [DateSubmitted] => 
                    [FastqID] => 150
                    [wgsID] => 240
                    [fwdFile] => BT_1317_R1.fastq.gz
                    [fwdMd5] => 0330d44fad9c07168beab0e3712fda2d
                    [revFile] => BT_1317_R2.fastq.gz
                    [revMd5] => d37fdc210bb2d3daf03524235ac3affb
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10679340
                    [enaRun] => ERR11271770
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 259
                    [wgsID] => 240
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-11-09 10:45:00
                    [dateCompleted] => 2022-11-10 05:35:00
                    [bamMd5] => f713b250606497247c9e67daefea153d
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1004004736
                    [primaryReads] => 
                    [mappedReads] => 1000885177
                    [primaryMapped] => 
                    [pairedReads] => 979566834
                    [meanInsertSize] => 421.85
                    [meanReadDepth] => 47.34
                    [variantsCalled] => 5978235
                    [variantsFiltered] => 5593278
                    [snpCount] => 3910588
                    [snpHom] => 2110574
                    [snpHet] => 1800014
                    [indelCount] => 1691721
                    [insHom] => 349589
                    [delHom] => 474370
                    [insHet] => 406395
                    [delHet] => 491585
                    [genomicsDB] => cf4-terrier
                    [varsity] => 0
                    [enaAnalysis] => ERZ21517655
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ215/ERZ21517655/BT_1317-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242