Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189975
[wgsExptID] => 9
[Batch] => Oxford_6
[SeqLaboratory] => Wellcome Trust Centre for Human Genetics
[Platform] => Illumina
[InstrumentModel] => HiSeq4000
[ReadType] => 100bp:PAIRED:15X
[LibraryPrep] => WTCHG, PCR FREE
[PcrFree] => Y
[SampleCount] => 5
[DateSubmitted] =>
[FastqID] => 469
[wgsID] => 115
[fwdFile] => BUT_25746_R1.fastq.gz
[fwdMd5] => fff1a29138d52ff8b304c2776cb30252
[revFile] => BUT_25746_R2.fastq.gz
[revMd5] => 8f22e167fa4299efe5049561c21dc2ab
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10810948
[enaRun] => ERR11403157
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 231
[wgsID] => 115
[refGenome] => cf4
[dateSubmitted] => 2022-11-08 12:41:00
[dateCompleted] => 2022-11-09 07:33:00
[bamMd5] => 293e802e3b8d2bd3ddaa826272b216dd
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 760896252
[primaryReads] =>
[mappedReads] => 741044576
[primaryMapped] =>
[pairedReads] => 695501366
[meanInsertSize] => 294.55
[meanReadDepth] => 34.64
[variantsCalled] => 5516387
[variantsFiltered] => 5252063
[snpCount] => 3735733
[snpHom] =>
[snpHet] =>
[indelCount] => 1521978
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21789629
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21789629/BuT_25746-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242