Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190232
                    [wgsExptID] => 13
                    [Batch] => Edinburgh_3
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 26
                    [DateSubmitted] => 
                    [FastqID] => 106
                    [wgsID] => 216
                    [fwdFile] => B_32562_R1.fastq.gz
                    [fwdMd5] => b2dffc6b8fb95f94e93ec14178a31d4f
                    [revFile] => B_32562_R2.fastq.gz
                    [revMd5] => 7cc830c5a64d456aa645e5def42795f0
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10679362
                    [enaRun] => ERR11271792
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 361
                    [wgsID] => 216
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-03-17 10:37:00
                    [dateCompleted] => 2023-03-19 01:00:00
                    [bamMd5] => a1df48de684bb73eb3e638a515656886
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 956650586
                    [primaryReads] => 
                    [mappedReads] => 954907596
                    [primaryMapped] => 
                    [pairedReads] => 937954058
                    [meanInsertSize] => 428.28
                    [meanReadDepth] => 41.04
                    [variantsCalled] => 5845164
                    [variantsFiltered] => 5449064
                    [snpCount] => 3793252
                    [snpHom] => 2268391
                    [snpHet] => 1524861
                    [indelCount] => 1663656
                    [insHom] => 364672
                    [delHom] => 500947
                    [insHet] => 366190
                    [delHet] => 456089
                    [genomicsDB] => cf4-working
                    [varsity] => 0
                    [enaAnalysis] => ERZ21375582
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375582/B_32562-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242