Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190159
                    [wgsExptID] => 14
                    [Batch] => Edinburgh_4
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 13
                    [DateSubmitted] => 
                    [FastqID] => 152
                    [wgsID] => 236
                    [fwdFile] => CBR_32601_R1.fastq.gz
                    [fwdMd5] => 7e1b4bf3ee78ab3481ab6b3c8fe69187
                    [revFile] => CBR_32601_R2.fastq.gz
                    [revMd5] => 39c153899d4073dab7fd543ff4c2e20c
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10679339
                    [enaRun] => ERR11271769
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 255
                    [wgsID] => 236
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-11-09 10:46:00
                    [dateCompleted] => 2022-11-10 00:16:00
                    [bamMd5] => ffcf324d65a1040721a4ceecec4a0f1c
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 957712901
                    [primaryReads] => 
                    [mappedReads] => 859464516
                    [primaryMapped] => 
                    [pairedReads] => 840589236
                    [meanInsertSize] => 402.02
                    [meanReadDepth] => 27.72
                    [variantsCalled] => 6169865
                    [variantsFiltered] => 5895055
                    [snpCount] => 4128710
                    [snpHom] => 1870575
                    [snpHet] => 2258135
                    [indelCount] => 1775796
                    [insHom] => 306071
                    [delHom] => 423401
                    [insHet] => 483961
                    [delHet] => 597744
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21517643
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ215/ERZ21517643/CBR_32601-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242