Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190159
[wgsExptID] => 14
[Batch] => Edinburgh_4
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 13
[DateSubmitted] =>
[FastqID] => 152
[wgsID] => 236
[fwdFile] => CBR_32601_R1.fastq.gz
[fwdMd5] => 7e1b4bf3ee78ab3481ab6b3c8fe69187
[revFile] => CBR_32601_R2.fastq.gz
[revMd5] => 39c153899d4073dab7fd543ff4c2e20c
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10679339
[enaRun] => ERR11271769
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 255
[wgsID] => 236
[refGenome] => cf4
[dateSubmitted] => 2022-11-09 10:46:00
[dateCompleted] => 2022-11-10 00:16:00
[bamMd5] => ffcf324d65a1040721a4ceecec4a0f1c
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 957712901
[primaryReads] =>
[mappedReads] => 859464516
[primaryMapped] =>
[pairedReads] => 840589236
[meanInsertSize] => 402.02
[meanReadDepth] => 27.72
[variantsCalled] => 6169865
[variantsFiltered] => 5895055
[snpCount] => 4128710
[snpHom] => 1870575
[snpHet] => 2258135
[indelCount] => 1775796
[insHom] => 306071
[delHom] => 423401
[insHet] => 483961
[delHet] => 597744
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21517643
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ215/ERZ21517643/CBR_32601-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242