Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190185
                    [wgsExptID] => 17
                    [Batch] => Edinburgh_7
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 19
                    [DateSubmitted] => 
                    [FastqID] => 155
                    [wgsID] => 264
                    [fwdFile] => CHC_25620_R1.fastq.gz
                    [fwdMd5] => 53355372ce5255d9ce719811d6a5cf4b
                    [revFile] => CHC_25620_R2.fastq.gz
                    [revMd5] => 0919f457ba4198192ad04105860311c2
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10665915
                    [enaRun] => ERR11257706
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 265
                    [wgsID] => 264
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-11-19 11:16:00
                    [dateCompleted] => 2022-11-20 08:48:00
                    [bamMd5] => 29a7ec80f485003c6199f463fc5be35c
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 912073719
                    [primaryReads] => 
                    [mappedReads] => 903728424
                    [primaryMapped] => 
                    [pairedReads] => 884827886
                    [meanInsertSize] => 523.51
                    [meanReadDepth] => 44.96
                    [variantsCalled] => 6338356
                    [variantsFiltered] => 5937294
                    [snpCount] => 4150097
                    [snpHom] => 1999273
                    [snpHet] => 2150824
                    [indelCount] => 1797909
                    [insHom] => 321911
                    [delHom] => 444043
                    [insHet] => 485032
                    [delHet] => 584537
                    [genomicsDB] => cf4-toy
                    [varsity] => 0
                    [enaAnalysis] => ERZ21780959
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780959/CHC_25620-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242