Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190236
                    [wgsExptID] => 13
                    [Batch] => Edinburgh_3
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 26
                    [DateSubmitted] => 
                    [FastqID] => 156
                    [wgsID] => 202
                    [fwdFile] => CHC_32205_R1.fastq.gz
                    [fwdMd5] => 6d97398ea2e885e83df3d91df2a5f317
                    [revFile] => CHC_32205_R2.fastq.gz
                    [revMd5] => 7ec55d33c1f91a19bda94678183a935a
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10682122
                    [enaRun] => ERR11274552
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 247
                    [wgsID] => 202
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-11-19 11:14:00
                    [dateCompleted] => 2022-11-20 09:13:00
                    [bamMd5] => 6e3360c448213cffb32ecc5184218c39
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1007842555
                    [primaryReads] => 
                    [mappedReads] => 862832897
                    [primaryMapped] => 
                    [pairedReads] => 845344734
                    [meanInsertSize] => 437.82
                    [meanReadDepth] => 42.41
                    [variantsCalled] => 6580380
                    [variantsFiltered] => 6185504
                    [snpCount] => 4324109
                    [snpHom] => 1829736
                    [snpHet] => 2494373
                    [indelCount] => 1872849
                    [insHom] => 282909
                    [delHom] => 396612
                    [insHet] => 556680
                    [delHet] => 679653
                    [genomicsDB] => cf4-toy
                    [varsity] => 0
                    [enaAnalysis] => ERZ21375568
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375568/CHC_32205-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242