Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190236
[wgsExptID] => 13
[Batch] => Edinburgh_3
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 26
[DateSubmitted] =>
[FastqID] => 156
[wgsID] => 202
[fwdFile] => CHC_32205_R1.fastq.gz
[fwdMd5] => 6d97398ea2e885e83df3d91df2a5f317
[revFile] => CHC_32205_R2.fastq.gz
[revMd5] => 7ec55d33c1f91a19bda94678183a935a
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10682122
[enaRun] => ERR11274552
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 247
[wgsID] => 202
[refGenome] => cf4
[dateSubmitted] => 2022-11-19 11:14:00
[dateCompleted] => 2022-11-20 09:13:00
[bamMd5] => 6e3360c448213cffb32ecc5184218c39
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1007842555
[primaryReads] =>
[mappedReads] => 862832897
[primaryMapped] =>
[pairedReads] => 845344734
[meanInsertSize] => 437.82
[meanReadDepth] => 42.41
[variantsCalled] => 6580380
[variantsFiltered] => 6185504
[snpCount] => 4324109
[snpHom] => 1829736
[snpHet] => 2494373
[indelCount] => 1872849
[insHom] => 282909
[delHom] => 396612
[insHet] => 556680
[delHet] => 679653
[genomicsDB] => cf4-toy
[varsity] => 0
[enaAnalysis] => ERZ21375568
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375568/CHC_32205-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242