Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA11296804
                    [wgsExptID] => 23
                    [Batch] => CRUKCI_1
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina DNA Prep
                    [PcrFree] => N
                    [SampleCount] => 23
                    [DateSubmitted] => 2021-06-11
                    [FastqID] => 632
                    [wgsID] => 9
                    [fwdFile] => CHC_35692_R1.fastq.gz
                    [fwdMd5] => e33c9c8a851629fafb32336b55218dca
                    [revFile] => CHC_35692_R2.fastq.gz
                    [revMd5] => 421287ba7d6b3cbeb2c703a5b6764820
                    [rawReads] => 1008412040
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10830377
                    [enaRun] => ERR11423069
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 26
                    [wgsID] => 9
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-07-11 16:12:00
                    [dateCompleted] => 2023-07-12 14:45:00
                    [bamMd5] => 0e1bd167e4426bed3b947465d1ca16de
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1017343481
                    [primaryReads] => 
                    [mappedReads] => 1015937933
                    [primaryMapped] => 
                    [pairedReads] => 994032140
                    [meanInsertSize] => 361.13
                    [meanReadDepth] => 50.10
                    [variantsCalled] => 6590514
                    [variantsFiltered] => 6170616
                    [snpCount] => 4328128
                    [snpHom] => 1852145
                    [snpHet] => 2475983
                    [indelCount] => 1853616
                    [insHom] => 302034
                    [delHom] => 423288
                    [insHet] => 530160
                    [delHet] => 640759
                    [genomicsDB] => cf4-toy
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659485
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659485/CHC_35692-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242