Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190171
                    [wgsExptID] => 16
                    [Batch] => Edinburgh_6
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 9
                    [DateSubmitted] => 
                    [FastqID] => 157
                    [wgsID] => 249
                    [fwdFile] => CKCS_33036_R1.fastq.gz
                    [fwdMd5] => b56f0b9592b38fd1b2e8ddedd581ee40
                    [revFile] => CKCS_33036_R2.fastq.gz
                    [revMd5] => 5f11ae0fc741c17bc7f43155b7f577b3
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10677690
                    [enaRun] => ERR11270102
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 394
                    [wgsID] => 249
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-03-24 11:29:00
                    [dateCompleted] => 2023-03-25 06:18:00
                    [bamMd5] => 22b04cb4e1eb6a7db2a1612a53074c2e
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 901850749
                    [primaryReads] => 
                    [mappedReads] => 898400967
                    [primaryMapped] => 
                    [pairedReads] => 879167210
                    [meanInsertSize] => 438.79
                    [meanReadDepth] => 37.54
                    [variantsCalled] => 6137415
                    [variantsFiltered] => 5817145
                    [snpCount] => 4069025
                    [snpHom] => 2012255
                    [snpHet] => 2056770
                    [indelCount] => 1757477
                    [insHom] => 329291
                    [delHom] => 452337
                    [insHet] => 455732
                    [delHet] => 554027
                    [genomicsDB] => cf4-toy
                    [varsity] => 0
                    [enaAnalysis] => ERZ21782175
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782175/CKCS_33036-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242