Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190171
[wgsExptID] => 16
[Batch] => Edinburgh_6
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 9
[DateSubmitted] =>
[FastqID] => 157
[wgsID] => 249
[fwdFile] => CKCS_33036_R1.fastq.gz
[fwdMd5] => b56f0b9592b38fd1b2e8ddedd581ee40
[revFile] => CKCS_33036_R2.fastq.gz
[revMd5] => 5f11ae0fc741c17bc7f43155b7f577b3
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10677690
[enaRun] => ERR11270102
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 394
[wgsID] => 249
[refGenome] => cf4
[dateSubmitted] => 2023-03-24 11:29:00
[dateCompleted] => 2023-03-25 06:18:00
[bamMd5] => 22b04cb4e1eb6a7db2a1612a53074c2e
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 901850749
[primaryReads] =>
[mappedReads] => 898400967
[primaryMapped] =>
[pairedReads] => 879167210
[meanInsertSize] => 438.79
[meanReadDepth] => 37.54
[variantsCalled] => 6137415
[variantsFiltered] => 5817145
[snpCount] => 4069025
[snpHom] => 2012255
[snpHet] => 2056770
[indelCount] => 1757477
[insHom] => 329291
[delHom] => 452337
[insHet] => 455732
[delHet] => 554027
[genomicsDB] => cf4-toy
[varsity] => 0
[enaAnalysis] => ERZ21782175
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782175/CKCS_33036-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242