Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190186
                    [wgsExptID] => 17
                    [Batch] => Edinburgh_7
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 19
                    [DateSubmitted] => 
                    [FastqID] => 158
                    [wgsID] => 270
                    [fwdFile] => CKCS_33554_R1.fastq.gz
                    [fwdMd5] => 6eeac011ff1c6576c8ebe850ea37def7
                    [revFile] => CKCS_33554_R2.fastq.gz
                    [revMd5] => 0ca4b0976817008c234af1a43fde3f98
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10665921
                    [enaRun] => ERR11257712
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 408
                    [wgsID] => 270
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-04-05 15:16:00
                    [dateCompleted] => 2023-04-06 10:38:00
                    [bamMd5] => b373d4e23755e5248ea8432e1f69b1f0
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 918035612
                    [primaryReads] => 
                    [mappedReads] => 914756144
                    [primaryMapped] => 
                    [pairedReads] => 895421276
                    [meanInsertSize] => 564.29
                    [meanReadDepth] => 46.87
                    [variantsCalled] => 6133179
                    [variantsFiltered] => 5735458
                    [snpCount] => 3993435
                    [snpHom] => 2057131
                    [snpHet] => 1936304
                    [indelCount] => 1751787
                    [insHom] => 336897
                    [delHom] => 460113
                    [insHet] => 448202
                    [delHet] => 540245
                    [genomicsDB] => cf4-toy
                    [varsity] => 0
                    [enaAnalysis] => ERZ21780960
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780960/CKCS_33554-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242