Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA11296820
                    [wgsExptID] => 23
                    [Batch] => CRUKCI_1
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina DNA Prep
                    [PcrFree] => N
                    [SampleCount] => 23
                    [DateSubmitted] => 2021-06-11
                    [FastqID] => 637
                    [wgsID] => 14
                    [fwdFile] => CKCS_36585_R1.fastq.gz
                    [fwdMd5] => 23367d0b0b18b64d2373ec28ae207ba3
                    [revFile] => CKCS_36585_R2.fastq.gz
                    [revMd5] => fde0ed78394e5ea67ec80d107c52fee9
                    [rawReads] => 838115734
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10830382
                    [enaRun] => ERR11423074
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 41
                    [wgsID] => 14
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-07-12 12:16:00
                    [dateCompleted] => 2023-07-13 06:56:00
                    [bamMd5] => 68ed5fab7454be5d47c924255e77e4dd
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 845607493
                    [primaryReads] => 
                    [mappedReads] => 844266796
                    [primaryMapped] => 
                    [pairedReads] => 824858248
                    [meanInsertSize] => 361.65
                    [meanReadDepth] => 39.95
                    [variantsCalled] => 6196223
                    [variantsFiltered] => 5828005
                    [snpCount] => 4069333
                    [snpHom] => 2003318
                    [snpHet] => 2066015
                    [indelCount] => 1768160
                    [insHom] => 333608
                    [delHom] => 462149
                    [insHet] => 454264
                    [delHet] => 553696
                    [genomicsDB] => cf4-toy
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659486
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659486/CKCS_36585-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242