Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA11296820
[wgsExptID] => 23
[Batch] => CRUKCI_1
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina DNA Prep
[PcrFree] => N
[SampleCount] => 23
[DateSubmitted] => 2021-06-11
[FastqID] => 637
[wgsID] => 14
[fwdFile] => CKCS_36585_R1.fastq.gz
[fwdMd5] => 23367d0b0b18b64d2373ec28ae207ba3
[revFile] => CKCS_36585_R2.fastq.gz
[revMd5] => fde0ed78394e5ea67ec80d107c52fee9
[rawReads] => 838115734
[FastqRCS] => 1
[enaExperiment] => ERX10830382
[enaRun] => ERR11423074
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 41
[wgsID] => 14
[refGenome] => cf4
[dateSubmitted] => 2023-07-12 12:16:00
[dateCompleted] => 2023-07-13 06:56:00
[bamMd5] => 68ed5fab7454be5d47c924255e77e4dd
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 845607493
[primaryReads] =>
[mappedReads] => 844266796
[primaryMapped] =>
[pairedReads] => 824858248
[meanInsertSize] => 361.65
[meanReadDepth] => 39.95
[variantsCalled] => 6196223
[variantsFiltered] => 5828005
[snpCount] => 4069333
[snpHom] => 2003318
[snpHet] => 2066015
[indelCount] => 1768160
[insHom] => 333608
[delHom] => 462149
[insHet] => 454264
[delHet] => 553696
[genomicsDB] => cf4-toy
[varsity] => 0
[enaAnalysis] => ERZ21659486
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659486/CKCS_36585-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242