Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190008
                    [wgsExptID] => 22
                    [Batch] => Edinburgh_12
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 20
                    [DateSubmitted] => 
                    [FastqID] => 160
                    [wgsID] => 56
                    [fwdFile] => CS_25475_R1.fastq.gz
                    [fwdMd5] => c29bf0ac77c2ed656843a0065b042569
                    [revFile] => CS_25475_R2.fastq.gz
                    [revMd5] => 6440eb0f8e547514ed654096f32be1fe
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX7019036
                    [enaRun] => ERR7448282
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 103
                    [wgsID] => 56
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-05-10 00:00:00
                    [dateCompleted] => 2022-05-11 18:24:00
                    [bamMd5] => ab77e7d2b73a12c6616d8924f37dd31d
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1011385718
                    [primaryReads] => 
                    [mappedReads] => 958897409
                    [primaryMapped] => 
                    [pairedReads] => 938984536
                    [meanInsertSize] => 488.12
                    [meanReadDepth] => 46.94
                    [variantsCalled] => 6061763
                    [variantsFiltered] => 5658454
                    [snpCount] => 3924672
                    [snpHom] => 2238022
                    [snpHet] => 1686650
                    [indelCount] => 1742940
                    [insHom] => 355672
                    [delHom] => 489585
                    [insHet] => 417426
                    [delHet] => 509906
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659983
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659983/CS_25475-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242