Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190008
[wgsExptID] => 22
[Batch] => Edinburgh_12
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 20
[DateSubmitted] =>
[FastqID] => 160
[wgsID] => 56
[fwdFile] => CS_25475_R1.fastq.gz
[fwdMd5] => c29bf0ac77c2ed656843a0065b042569
[revFile] => CS_25475_R2.fastq.gz
[revMd5] => 6440eb0f8e547514ed654096f32be1fe
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX7019036
[enaRun] => ERR7448282
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 103
[wgsID] => 56
[refGenome] => cf4
[dateSubmitted] => 2022-05-10 00:00:00
[dateCompleted] => 2022-05-11 18:24:00
[bamMd5] => ab77e7d2b73a12c6616d8924f37dd31d
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1011385718
[primaryReads] =>
[mappedReads] => 958897409
[primaryMapped] =>
[pairedReads] => 938984536
[meanInsertSize] => 488.12
[meanReadDepth] => 46.94
[variantsCalled] => 6061763
[variantsFiltered] => 5658454
[snpCount] => 3924672
[snpHom] => 2238022
[snpHet] => 1686650
[indelCount] => 1742940
[insHom] => 355672
[delHom] => 489585
[insHet] => 417426
[delHet] => 509906
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21659983
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659983/CS_25475-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242