Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190009
                    [wgsExptID] => 22
                    [Batch] => Edinburgh_12
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 20
                    [DateSubmitted] => 
                    [FastqID] => 161
                    [wgsID] => 59
                    [fwdFile] => CS_32629_R1.fastq.gz
                    [fwdMd5] => 1622423228483baf34f3a5571553fcae
                    [revFile] => CS_32629_R2.fastq.gz
                    [revMd5] => 4eee301d366a402fa60b29973303dc0c
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX7019037
                    [enaRun] => ERR7448283
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 104
                    [wgsID] => 59
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-05-10 23:40:00
                    [dateCompleted] => 2022-05-12 02:48:00
                    [bamMd5] => 040c9d33cff240b1b3131636431f79c5
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 938016941
                    [primaryReads] => 
                    [mappedReads] => 925624129
                    [primaryMapped] => 
                    [pairedReads] => 908374982
                    [meanInsertSize] => 466.28
                    [meanReadDepth] => 46.52
                    [variantsCalled] => 6453329
                    [variantsFiltered] => 6043738
                    [snpCount] => 4216841
                    [snpHom] => 1906844
                    [snpHet] => 2309997
                    [indelCount] => 1838112
                    [insHom] => 297988
                    [delHom] => 417720
                    [insHet] => 522306
                    [delHet] => 639689
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659984
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659984/CS_32629-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242