Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190009
[wgsExptID] => 22
[Batch] => Edinburgh_12
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 20
[DateSubmitted] =>
[FastqID] => 161
[wgsID] => 59
[fwdFile] => CS_32629_R1.fastq.gz
[fwdMd5] => 1622423228483baf34f3a5571553fcae
[revFile] => CS_32629_R2.fastq.gz
[revMd5] => 4eee301d366a402fa60b29973303dc0c
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX7019037
[enaRun] => ERR7448283
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 104
[wgsID] => 59
[refGenome] => cf4
[dateSubmitted] => 2022-05-10 23:40:00
[dateCompleted] => 2022-05-12 02:48:00
[bamMd5] => 040c9d33cff240b1b3131636431f79c5
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 938016941
[primaryReads] =>
[mappedReads] => 925624129
[primaryMapped] =>
[pairedReads] => 908374982
[meanInsertSize] => 466.28
[meanReadDepth] => 46.52
[variantsCalled] => 6453329
[variantsFiltered] => 6043738
[snpCount] => 4216841
[snpHom] => 1906844
[snpHet] => 2309997
[indelCount] => 1838112
[insHom] => 297988
[delHom] => 417720
[insHet] => 522306
[delHet] => 639689
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21659984
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659984/CS_32629-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242