Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189949
[wgsExptID] => 20
[Batch] => Edinburgh_10
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 7
[DateSubmitted] => 2018-10-23
[FastqID] => 162
[wgsID] => 48
[fwdFile] => CS_35365_R1.fastq.gz
[fwdMd5] => 54ae2dd5729363f673357ffaa174a06c
[revFile] => CS_35365_R2.fastq.gz
[revMd5] => b44cb9279f1d3342b429dad07d44ca23
[rawReads] => 826315756
[FastqRCS] => 1
[enaExperiment] => ERX10158678
[enaRun] => ERR10691971
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 75
[wgsID] => 48
[refGenome] => cf4
[dateSubmitted] => 2022-05-10 00:00:00
[dateCompleted] => 2022-05-11 14:02:00
[bamMd5] => 8360aafdab229e7a017d2f7b3c54b079
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 830921491
[primaryReads] =>
[mappedReads] => 753350175
[primaryMapped] =>
[pairedReads] => 739443370
[meanInsertSize] => 440.16
[meanReadDepth] => 41.19
[variantsCalled] => 6541917
[variantsFiltered] => 6159678
[snpCount] => 4313448
[snpHom] => 1793919
[snpHet] => 2519529
[indelCount] => 1857696
[insHom] => 277620
[delHom] => 391982
[insHet] => 551377
[delHet] => 679203
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21736956
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21736956/CS_35365-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242