Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790765
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 763
                    [wgsID] => 471
                    [fwdFile] => CS_39132_R1.fastq.gz
                    [fwdMd5] => 3ece612d7ebe97031e9929ea7382f09c
                    [revFile] => CS_39132_R2.fastq.gz
                    [revMd5] => 7964ed1109643307ab2182f1d8c413d3
                    [rawReads] => 963355120
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028961
                    [enaRun] => ERR13658259
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1674
                    [wgsID] => 471
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-08-22 16:12:11
                    [dateCompleted] => 2024-08-23 11:31:50
                    [bamMd5] => 66287c1ba2d6e20ade108e6d38212928
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 900825139
                    [primaryReads] => 887830936
                    [mappedReads] => 898386110
                    [primaryMapped] => 885391907
                    [pairedReads] => 863889298
                    [meanInsertSize] => 348.80
                    [meanReadDepth] => 39.11
                    [variantsCalled] => 6156577
                    [variantsFiltered] => 5861258
                    [snpCount] => 4165341
                    [snpHom] => 1919989
                    [snpHet] => 2245352
                    [indelCount] => 1704616
                    [insHom] => 345563
                    [delHom] => 466775
                    [insHet] => 414880
                    [delHet] => 508666
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876965
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876965/CS_39132-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242