Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790758
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 750
[wgsID] => 459
[fwdFile] => CS_39368_R1.fastq.gz
[fwdMd5] => 1579092c6e34a1e800477d9075c706b8
[revFile] => CS_39368_R2.fastq.gz
[revMd5] => ea3f061cb215605167b070ef92248b5f
[rawReads] => 936576206
[FastqRCS] => 1
[enaExperiment] => ERX13028962
[enaRun] => ERR13658260
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1675
[wgsID] => 459
[refGenome] => cf4
[dateSubmitted] => 2024-08-22 16:12:47
[dateCompleted] => 2024-08-23 11:39:47
[bamMd5] => 0321db56fa91d3c006719ad988682411
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 932780549
[primaryReads] => 920914793
[mappedReads] => 930968148
[primaryMapped] => 919102392
[pairedReads] => 900794380
[meanInsertSize] => 343.51
[meanReadDepth] => 41.43
[variantsCalled] => 5961853
[variantsFiltered] => 5647594
[snpCount] => 3995753
[snpHom] => 2102724
[snpHet] => 1893029
[indelCount] => 1659636
[insHom] => 383404
[delHom] => 510612
[insHet] => 356495
[delHet] => 436720
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ24876966
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876966/CS_39368-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242