Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMN13269029
[wgsExptID] => 0
[Batch] => Downloaded
[SeqLaboratory] => Various
[Platform] => Various
[InstrumentModel] => Various
[ReadType] =>
[LibraryPrep] =>
[PcrFree] =>
[SampleCount] =>
[DateSubmitted] =>
[FastqID] => 649
[wgsID] => 410
[fwdFile] => SRR10441643_1.fastq.gz
[fwdMd5] => 8295a4a19a123068eb526f42848b297b
[revFile] => SRR10441643_2.fastq.gz
[revMd5] => fc3ca46f7b44b7bccaa818adf2da9715
[rawReads] => 2125152260
[FastqRCS] => 1
[enaExperiment] => SRX7136379
[enaRun] => SRR10441643
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1513
[wgsID] => 410
[refGenome] => cf4
[dateSubmitted] => 2023-10-03 14:02:20
[dateCompleted] => 2023-10-06 12:38:34
[bamMd5] => a6b150619174b7f4276d11e8efac7df2
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1141321775
[primaryReads] => 1054500715
[mappedReads] => 1137899222
[primaryMapped] => 1051078162
[pairedReads] => 956771150
[meanInsertSize] => 367.27
[meanReadDepth] => 40.12
[variantsCalled] => 6662169
[variantsFiltered] => 6181345
[snpCount] => 4254558
[snpHom] =>
[snpHet] =>
[indelCount] => 1938353
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] =>
[enaBam] =>
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242