Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMN13269039
[wgsExptID] => 0
[Batch] => Downloaded
[SeqLaboratory] => Various
[Platform] => Various
[InstrumentModel] => Various
[ReadType] =>
[LibraryPrep] =>
[PcrFree] =>
[SampleCount] =>
[DateSubmitted] =>
[FastqID] => 650
[wgsID] => 411
[fwdFile] => SRR10441644_1.fastq.gz
[fwdMd5] => 2b529eef4e22f692ddf84d6f72a6f3d0
[revFile] => SRR10441644_2.fastq.gz
[revMd5] => b4371643ab33eb0aa359ffc5d0eb8ccc
[rawReads] => 1845901040
[FastqRCS] => 1
[enaExperiment] => SRX7136378
[enaRun] => SRR10441644
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1509
[wgsID] => 411
[refGenome] => cf4
[dateSubmitted] => 2023-09-25 13:05:42
[dateCompleted] => 2023-09-26 10:04:43
[bamMd5] => 45f30832ec7495d5c4eb0276ff0214fc
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 991503099
[primaryReads] => 915838664
[mappedReads] => 987211327
[primaryMapped] => 911546892
[pairedReads] => 829025368
[meanInsertSize] => 383.15
[meanReadDepth] => 27.78
[variantsCalled] => 6388592
[variantsFiltered] => 5994283
[snpCount] => 4115288
[snpHom] =>
[snpHet] =>
[indelCount] => 1888500
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] =>
[enaBam] =>
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242