Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMN13269017
[wgsExptID] => 0
[Batch] => Downloaded
[SeqLaboratory] => Various
[Platform] => Various
[InstrumentModel] => Various
[ReadType] =>
[LibraryPrep] =>
[PcrFree] =>
[SampleCount] =>
[DateSubmitted] =>
[FastqID] => 651
[wgsID] => 412
[fwdFile] => SRR10441651_1.fastq.gz
[fwdMd5] => 1e5190e952c3f7d5bb618cc161c84340
[revFile] => SRR10441651_2.fastq.gz
[revMd5] => 6b3c933aed9cc2ae55428ed21555b329
[rawReads] => 1773740024
[FastqRCS] => 1
[enaExperiment] => SRX7136397
[enaRun] => SRR10441651
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1510
[wgsID] => 412
[refGenome] => cf4
[dateSubmitted] => 2023-09-25 13:03:24
[dateCompleted] => 2023-09-26 10:43:18
[bamMd5] => f05d844c250ef90a8373726f6d4fa4dd
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 944395186
[primaryReads] => 877992684
[mappedReads] => 941830145
[primaryMapped] => 875427643
[pairedReads] => 801268970
[meanInsertSize] => 374.16
[meanReadDepth] => 28.63
[variantsCalled] => 6284750
[variantsFiltered] => 5885856
[snpCount] => 4044888
[snpHom] =>
[snpHet] =>
[indelCount] => 1850540
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] =>
[enaBam] =>
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
|---|
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242
