Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190238
[wgsExptID] => 13
[Batch] => Edinburgh_3
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 26
[DateSubmitted] =>
[FastqID] => 166
[wgsID] => 195
[fwdFile] => DD_14598_R1.fastq.gz
[fwdMd5] => a65117530f7a03d9a82fa32128a7cbb4
[revFile] => DD_14598_R2.fastq.gz
[revMd5] => 7d2bf1156636eb6ab69685e0f1b75772
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10682115
[enaRun] => ERR11274545
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 248
[wgsID] => 195
[refGenome] => cf4
[dateSubmitted] => 2022-11-18 12:54:00
[dateCompleted] => 2022-11-19 08:14:00
[bamMd5] => 10d87924dba0b9fdd08cf6bb554c2b2f
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1014523393
[primaryReads] =>
[mappedReads] => 1012130194
[primaryMapped] =>
[pairedReads] => 992710678
[meanInsertSize] => 480.55
[meanReadDepth] => 46.80
[variantsCalled] => 6174084
[variantsFiltered] => 5775190
[snpCount] => 4013034
[snpHom] => 2081122
[snpHet] => 1931912
[indelCount] => 1771597
[insHom] => 329457
[delHom] => 455743
[insHet] => 456760
[delHet] => 562910
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21375562
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375562/DD_14598-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242