Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190113
[wgsExptID] => 19
[Batch] => Edinburgh_9
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 17
[DateSubmitted] => 2018-04-26
[FastqID] => 165
[wgsID] => 78
[fwdFile] => D_34425_R1.fastq.gz
[fwdMd5] => 7d16c6b7f68eb88db3f8916fb2d18595
[revFile] => D_34425_R2.fastq.gz
[revMd5] => 070dffdbc53287c4eff459c537720015
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX5386790
[enaRun] => ERR5671297
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 65
[wgsID] => 78
[refGenome] => cf4
[dateSubmitted] => 2022-10-11 14:00:00
[dateCompleted] => 2022-10-12 06:26:00
[bamMd5] => 5bf96b5a159850443a940345edbc18c6
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1004393141
[primaryReads] =>
[mappedReads] => 892337063
[primaryMapped] =>
[pairedReads] => 872929732
[meanInsertSize] => 396.28
[meanReadDepth] => 28.79
[variantsCalled] => 6124913
[variantsFiltered] => 5802450
[snpCount] => 4023735
[snpHom] => 2012069
[snpHet] => 2011666
[indelCount] => 1788742
[insHom] => 319178
[delHom] => 444878
[insHet] => 472473
[delHet] => 586799
[genomicsDB] => cf4-working
[varsity] => 0
[enaAnalysis] => ERZ21775559
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21775559/D_34425-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242