Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA11296803
[wgsExptID] => 23
[Batch] => CRUKCI_1
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina DNA Prep
[PcrFree] => N
[SampleCount] => 23
[DateSubmitted] => 2021-06-11
[FastqID] => 640
[wgsID] => 17
[fwdFile] => ESD_36905_R1.fastq.gz
[fwdMd5] => 8adf245310f971d55280da4e1d27cf42
[revFile] => ESD_36905_R2.fastq.gz
[revMd5] => cb398625fa8f121b8d820de34b383a6f
[rawReads] => 1055071420
[FastqRCS] => 1
[enaExperiment] => ERX10830385
[enaRun] => ERR11423077
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 25
[wgsID] => 17
[refGenome] => cf4
[dateSubmitted] => 2023-07-18 11:23:00
[dateCompleted] => 2023-07-19 12:36:00
[bamMd5] => 0d5960c5ea64f5b38eefbfa957bf847b
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 762658598
[primaryReads] =>
[mappedReads] => 761294295
[primaryMapped] =>
[pairedReads] => 736315156
[meanInsertSize] => 309.60
[meanReadDepth] => 34.29
[variantsCalled] => 6721529
[variantsFiltered] => 6370336
[snpCount] => 4478327
[snpHom] => 1604806
[snpHet] => 2873521
[indelCount] => 1903983
[insHom] => 253311
[delHom] => 364557
[insHet] => 597656
[delHet] => 735368
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21659489
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659489/ESD_36905-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242