Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA11296803
                    [wgsExptID] => 23
                    [Batch] => CRUKCI_1
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina DNA Prep
                    [PcrFree] => N
                    [SampleCount] => 23
                    [DateSubmitted] => 2021-06-11
                    [FastqID] => 640
                    [wgsID] => 17
                    [fwdFile] => ESD_36905_R1.fastq.gz
                    [fwdMd5] => 8adf245310f971d55280da4e1d27cf42
                    [revFile] => ESD_36905_R2.fastq.gz
                    [revMd5] => cb398625fa8f121b8d820de34b383a6f
                    [rawReads] => 1055071420
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10830385
                    [enaRun] => ERR11423077
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 25
                    [wgsID] => 17
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-07-18 11:23:00
                    [dateCompleted] => 2023-07-19 12:36:00
                    [bamMd5] => 0d5960c5ea64f5b38eefbfa957bf847b
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 762658598
                    [primaryReads] => 
                    [mappedReads] => 761294295
                    [primaryMapped] => 
                    [pairedReads] => 736315156
                    [meanInsertSize] => 309.60
                    [meanReadDepth] => 34.29
                    [variantsCalled] => 6721529
                    [variantsFiltered] => 6370336
                    [snpCount] => 4478327
                    [snpHom] => 1604806
                    [snpHet] => 2873521
                    [indelCount] => 1903983
                    [insHom] => 253311
                    [delHom] => 364557
                    [insHet] => 597656
                    [delHet] => 735368
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659489
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659489/ESD_36905-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242