Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA11296823
[wgsExptID] => 23
[Batch] => CRUKCI_1
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina DNA Prep
[PcrFree] => N
[SampleCount] => 23
[DateSubmitted] => 2021-06-11
[FastqID] => 646
[wgsID] => 23
[fwdFile] => ESD_37411_R1.fastq.gz
[fwdMd5] => bd043352e265677861c9292ae66d3f31
[revFile] => ESD_37411_R2.fastq.gz
[revMd5] => ff37d45a5c067c791c293a8d341c0d6d
[rawReads] => 832184578
[FastqRCS] => 1
[enaExperiment] => ERX10830391
[enaRun] => ERR11423083
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 44
[wgsID] => 23
[refGenome] => cf4
[dateSubmitted] => 2023-07-19 11:01:00
[dateCompleted] => 2023-07-20 07:40:00
[bamMd5] => 4eb6e4f1b4dc5d93b9a7489fd4af9706
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 753670016
[primaryReads] =>
[mappedReads] => 752707541
[primaryMapped] =>
[pairedReads] => 734259252
[meanInsertSize] => 355.98
[meanReadDepth] => 36.68
[variantsCalled] => 6742954
[variantsFiltered] => 6353997
[snpCount] => 4469113
[snpHom] => 1629624
[snpHet] => 2839489
[indelCount] => 1896984
[insHom] => 259520
[delHom] => 370998
[insHet] => 588132
[delHet] => 724570
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21659490
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659490/ESD_37411-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242