Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190092
[wgsExptID] => 18
[Batch] => Edinburgh_8
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 17
[DateSubmitted] => 2017-12-12
[FastqID] => 172
[wgsID] => 303
[fwdFile] => ESS_34006_R1.fastq.gz
[fwdMd5] => 460616a3845c060877bbb3fdbd52cb6a
[revFile] => ESS_34006_R2.fastq.gz
[revMd5] => 15564b971e1bf35759db740c4d316aaa
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10664700
[enaRun] => ERR11256491
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 429
[wgsID] => 303
[refGenome] => cf4
[dateSubmitted] => 2023-02-02 14:39:00
[dateCompleted] => 2023-02-03 09:01:00
[bamMd5] => b29d12ee7ab12c8e6b9d34aad52f98f8
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 926543082
[primaryReads] =>
[mappedReads] => 923428075
[primaryMapped] =>
[pairedReads] => 902908946
[meanInsertSize] => 488.01
[meanReadDepth] => 49.81
[variantsCalled] => 6418441
[variantsFiltered] => 6030875
[snpCount] => 4214347
[snpHom] => 1866205
[snpHet] => 2348142
[indelCount] => 1827918
[insHom] => 307893
[delHom] => 424341
[insHet] => 517114
[delHet] => 620227
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21778097
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21778097/ESS_34006-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242