Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721093
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 581
                    [wgsID] => 345
                    [fwdFile] => ESS_36198_R1.fastq.gz
                    [fwdMd5] => fe8b884408a3d9d57d9660dd44b392e0
                    [revFile] => ESS_36198_R2.fastq.gz
                    [revMd5] => 474388c598709b130b4beb3ec8f8fd9f
                    [rawReads] => 901733478
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632420
                    [enaRun] => ERR11203036
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 800
                    [wgsID] => 345
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-19 12:38:00
                    [dateCompleted] => 2023-06-20 05:21:00
                    [bamMd5] => 8bc54407c2bf9e1cf96e9bf45c18aba5
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 799036291
                    [primaryReads] => 
                    [mappedReads] => 798023690
                    [primaryMapped] => 
                    [pairedReads] => 773088672
                    [meanInsertSize] => 383.50
                    [meanReadDepth] => 37.83
                    [variantsCalled] => 6551962
                    [variantsFiltered] => 6181444
                    [snpCount] => 4330248
                    [snpHom] => 1775120
                    [snpHet] => 2555128
                    [indelCount] => 1862569
                    [insHom] => 286206
                    [delHom] => 402225
                    [insHet] => 549799
                    [delHet] => 667332
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817123
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817123/ESS_36198-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242