Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721115
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 617
                    [wgsID] => 367
                    [fwdFile] => ESS_39753_R1.fastq.gz
                    [fwdMd5] => f5521bd1478780844bcfec052f2473c3
                    [revFile] => ESS_39753_R2.fastq.gz
                    [revMd5] => 788c2876cfdf8afc6292e532fc69bcac
                    [rawReads] => 796795994
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632456
                    [enaRun] => ERR11203072
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 836
                    [wgsID] => 367
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-21 14:37:00
                    [dateCompleted] => 2023-06-22 09:26:00
                    [bamMd5] => 68d90694f674110cd810fa5565f165bd
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 432422824
                    [primaryReads] => 
                    [mappedReads] => 431231522
                    [primaryMapped] => 
                    [pairedReads] => 413761908
                    [meanInsertSize] => 378.29
                    [meanReadDepth] => 20.10
                    [variantsCalled] => 5996665
                    [variantsFiltered] => 5719878
                    [snpCount] => 4020074
                    [snpHom] => 2050384
                    [snpHet] => 1969690
                    [indelCount] => 1707626
                    [insHom] => 340900
                    [delHom] => 475826
                    [insHet] => 411430
                    [delHet] => 506606
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817125
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817125/ESS_39753-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242