Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721115
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 617
[wgsID] => 367
[fwdFile] => ESS_39753_R1.fastq.gz
[fwdMd5] => f5521bd1478780844bcfec052f2473c3
[revFile] => ESS_39753_R2.fastq.gz
[revMd5] => 788c2876cfdf8afc6292e532fc69bcac
[rawReads] => 796795994
[FastqRCS] => 1
[enaExperiment] => ERX10632456
[enaRun] => ERR11203072
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 836
[wgsID] => 367
[refGenome] => cf4
[dateSubmitted] => 2023-06-21 14:37:00
[dateCompleted] => 2023-06-22 09:26:00
[bamMd5] => 68d90694f674110cd810fa5565f165bd
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 432422824
[primaryReads] =>
[mappedReads] => 431231522
[primaryMapped] =>
[pairedReads] => 413761908
[meanInsertSize] => 378.29
[meanReadDepth] => 20.10
[variantsCalled] => 5996665
[variantsFiltered] => 5719878
[snpCount] => 4020074
[snpHom] => 2050384
[snpHet] => 1969690
[indelCount] => 1707626
[insHom] => 340900
[delHom] => 475826
[insHet] => 411430
[delHet] => 506606
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21817125
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817125/ESS_39753-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242