Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099842
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 853
                    [wgsID] => 536
                    [fwdFile] => ESS_41478_R1.fastq.gz
                    [fwdMd5] => 32cb447115fb1a11d36a2585f700db70
                    [revFile] => ESS_41478_R2.fastq.gz
                    [revMd5] => f09880b2e8ba9eaa8fb1e7fe2bafe2a0
                    [rawReads] => 1020201124
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611264
                    [enaRun] => ERR14209044
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1749
                    [wgsID] => 536
                    [refGenome] => cf4
                    [dateSubmitted] => 2025-01-10 13:43:39
                    [dateCompleted] => 2025-01-11 11:08:13
                    [bamMd5] => f9d2f143bf361e8e1030a16283a01993
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 710732904
                    [primaryReads] => 699635083
                    [mappedReads] => 709609094
                    [primaryMapped] => 698511273
                    [pairedReads] => 685528674
                    [meanInsertSize] => 332.29
                    [meanReadDepth] => 28.64
                    [variantsCalled] => 6458208
                    [variantsFiltered] => 6200732
                    [snpCount] => 4399875
                    [snpHom] => 1651533
                    [snpHet] => 2748342
                    [indelCount] => 1811294
                    [insHom] => 291227
                    [delHom] => 405832
                    [insHet] => 521082
                    [delHet] => 634145
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759324
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759324/ESS_41478-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242