Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099848
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 859
[wgsID] => 542
[fwdFile] => ESS_41486_R1.fastq.gz
[fwdMd5] => 44a5227678bdcc1a35dfeb534c107daa
[revFile] => ESS_41486_R2.fastq.gz
[revMd5] => 93c8f0077ac29187227d0bd20f70910e
[rawReads] => 1068385834
[FastqRCS] => 1
[enaExperiment] => ERX13611267
[enaRun] => ERR14209047
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1711
[wgsID] => 542
[refGenome] => cf4
[dateSubmitted] => 2024-12-25 11:08:31
[dateCompleted] => 2024-12-26 04:47:30
[bamMd5] => 3cf9e059bf69e922dac80aff9366ccf4
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 892222126
[primaryReads] => 884692633
[mappedReads] => 891185600
[primaryMapped] => 883656107
[pairedReads] => 869362212
[meanInsertSize] => 390.88
[meanReadDepth] => 34.80
[variantsCalled] => 6391571
[variantsFiltered] => 6083040
[snpCount] => 4304779
[snpHom] => 1771773
[snpHet] => 2533006
[indelCount] => 1788379
[insHom] => 315974
[delHom] => 433629
[insHet] => 487100
[delHet] => 590796
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ25759337
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759337/ESS_41486-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242