Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099849
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 860
                    [wgsID] => 543
                    [fwdFile] => ESS_41487_R1.fastq.gz
                    [fwdMd5] => ae6feaa2a8672b7224635ce29c02e301
                    [revFile] => ESS_41487_R2.fastq.gz
                    [revMd5] => d6473ab8f39fe7b170da32ca08dfa4de
                    [rawReads] => 921441160
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611268
                    [enaRun] => ERR14209048
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1712
                    [wgsID] => 543
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-12-25 11:08:58
                    [dateCompleted] => 2024-12-26 02:50:06
                    [bamMd5] => c9ca58724cb9723655268906d86cef8b
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 754943318
                    [primaryReads] => 749426494
                    [mappedReads] => 754186694
                    [primaryMapped] => 748669870
                    [pairedReads] => 737087280
                    [meanInsertSize] => 390.90
                    [meanReadDepth] => 29.59
                    [variantsCalled] => 6044676
                    [variantsFiltered] => 5778198
                    [snpCount] => 4081319
                    [snpHom] => 1916716
                    [snpHet] => 2164603
                    [indelCount] => 1705176
                    [insHom] => 346315
                    [delHom] => 469729
                    [insHet] => 416120
                    [delHet] => 505636
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759344
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759344/ESS_41487-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242