Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099855
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 866
                    [wgsID] => 549
                    [fwdFile] => ESS_41496_R1.fastq.gz
                    [fwdMd5] => 3f1e643026cb14fe6507dbd40e475e08
                    [revFile] => ESS_41496_R2.fastq.gz
                    [revMd5] => 5ba2239aeba564754f45c3183d90ddbf
                    [rawReads] => 1103213482
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611270
                    [enaRun] => ERR14209050
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1713
                    [wgsID] => 549
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-12-25 11:09:25
                    [dateCompleted] => 2024-12-26 05:29:17
                    [bamMd5] => 1b5b69361e4bb26bdd59428086001595
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 811486238
                    [primaryReads] => 805204801
                    [mappedReads] => 810466361
                    [primaryMapped] => 804184924
                    [pairedReads] => 789422742
                    [meanInsertSize] => 401.55
                    [meanReadDepth] => 32.95
                    [variantsCalled] => 6326149
                    [variantsFiltered] => 6015956
                    [snpCount] => 4262856
                    [snpHom] => 1869873
                    [snpHet] => 2392983
                    [indelCount] => 1762464
                    [insHom] => 337337
                    [delHom] => 455279
                    [insHet] => 452415
                    [delHet] => 553499
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759336
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759336/ESS_41496-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242