Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099855
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 866
[wgsID] => 549
[fwdFile] => ESS_41496_R1.fastq.gz
[fwdMd5] => 3f1e643026cb14fe6507dbd40e475e08
[revFile] => ESS_41496_R2.fastq.gz
[revMd5] => 5ba2239aeba564754f45c3183d90ddbf
[rawReads] => 1103213482
[FastqRCS] => 1
[enaExperiment] => ERX13611270
[enaRun] => ERR14209050
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1713
[wgsID] => 549
[refGenome] => cf4
[dateSubmitted] => 2024-12-25 11:09:25
[dateCompleted] => 2024-12-26 05:29:17
[bamMd5] => 1b5b69361e4bb26bdd59428086001595
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 811486238
[primaryReads] => 805204801
[mappedReads] => 810466361
[primaryMapped] => 804184924
[pairedReads] => 789422742
[meanInsertSize] => 401.55
[meanReadDepth] => 32.95
[variantsCalled] => 6326149
[variantsFiltered] => 6015956
[snpCount] => 4262856
[snpHom] => 1869873
[snpHet] => 2392983
[indelCount] => 1762464
[insHom] => 337337
[delHom] => 455279
[insHet] => 452415
[delHet] => 553499
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ25759336
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759336/ESS_41496-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242