Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099858
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 869
[wgsID] => 552
[fwdFile] => ESS_41529_R1.fastq.gz
[fwdMd5] => 5203bd2d2e632892cb355d6479991232
[revFile] => ESS_41529_R2.fastq.gz
[revMd5] => 8c8805b0d04d0039e73959df4b6e8f80
[rawReads] => 1094207892
[FastqRCS] => 1
[enaExperiment] => ERX13611271
[enaRun] => ERR14209051
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1714
[wgsID] => 552
[refGenome] => cf4
[dateSubmitted] => 2024-12-25 11:09:55
[dateCompleted] => 2024-12-26 07:39:59
[bamMd5] => 092a9b2afc9e8c4f0645bc780af1b2d1
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 826030369
[primaryReads] => 817349668
[mappedReads] => 824789074
[primaryMapped] => 816108373
[pairedReads] => 803129592
[meanInsertSize] => 366.36
[meanReadDepth] => 33.47
[variantsCalled] => 6298067
[variantsFiltered] => 6010995
[snpCount] => 4251375
[snpHom] => 1834801
[snpHet] => 2416574
[indelCount] => 1769036
[insHom] => 329597
[delHom] => 448462
[insHet] => 462428
[delHet] => 565927
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ25759340
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759340/ESS_41529-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242