Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099858
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 869
                    [wgsID] => 552
                    [fwdFile] => ESS_41529_R1.fastq.gz
                    [fwdMd5] => 5203bd2d2e632892cb355d6479991232
                    [revFile] => ESS_41529_R2.fastq.gz
                    [revMd5] => 8c8805b0d04d0039e73959df4b6e8f80
                    [rawReads] => 1094207892
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611271
                    [enaRun] => ERR14209051
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1714
                    [wgsID] => 552
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-12-25 11:09:55
                    [dateCompleted] => 2024-12-26 07:39:59
                    [bamMd5] => 092a9b2afc9e8c4f0645bc780af1b2d1
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 826030369
                    [primaryReads] => 817349668
                    [mappedReads] => 824789074
                    [primaryMapped] => 816108373
                    [pairedReads] => 803129592
                    [meanInsertSize] => 366.36
                    [meanReadDepth] => 33.47
                    [variantsCalled] => 6298067
                    [variantsFiltered] => 6010995
                    [snpCount] => 4251375
                    [snpHom] => 1834801
                    [snpHet] => 2416574
                    [indelCount] => 1769036
                    [insHom] => 329597
                    [delHom] => 448462
                    [insHet] => 462428
                    [delHet] => 565927
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759340
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759340/ESS_41529-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242