Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099859
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 870
[wgsID] => 553
[fwdFile] => ESS_41530_R1.fastq.gz
[fwdMd5] => 2c14e41cd9b506b2cdd1ffd6c9874efe
[revFile] => ESS_41530_R2.fastq.gz
[revMd5] => 16576c7573a665a337f6a4a9ca570b5b
[rawReads] => 1360088164
[FastqRCS] => 1
[enaExperiment] => ERX13611272
[enaRun] => ERR14209052
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1715
[wgsID] => 553
[refGenome] => cf4
[dateSubmitted] => 2024-12-25 11:10:19
[dateCompleted] => 2024-12-26 09:09:37
[bamMd5] => 4fc545c4e0436e1cf3a68cf8a358bf6f
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1092888077
[primaryReads] => 1079890234
[mappedReads] => 1091576472
[primaryMapped] => 1078578629
[pairedReads] => 1061858370
[meanInsertSize] => 344.17
[meanReadDepth] => 42.71
[variantsCalled] => 6371841
[variantsFiltered] => 6061023
[snpCount] => 4266409
[snpHom] => 1818986
[snpHet] => 2447423
[indelCount] => 1805080
[insHom] => 327135
[delHom] => 445734
[insHet] => 484950
[delHet] => 587979
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ25759335
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759335/ESS_41530-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242