Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099860
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 871
[wgsID] => 554
[fwdFile] => ESS_41544_R1.fastq.gz
[fwdMd5] => 1183aaba1a6c2b112ce48df68de8e23d
[revFile] => ESS_41544_R2.fastq.gz
[revMd5] => c5e1e6740db681ddd7a764964d871df4
[rawReads] => 1004216752
[FastqRCS] => 1
[enaExperiment] => ERX13611273
[enaRun] => ERR14209053
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1716
[wgsID] => 554
[refGenome] => cf4
[dateSubmitted] => 2024-12-25 11:10:42
[dateCompleted] => 2024-12-26 03:25:07
[bamMd5] => a6d885ec8e57d86c7d9ab0085d7fa9e0
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 727474455
[primaryReads] => 719679390
[mappedReads] => 726414846
[primaryMapped] => 718619781
[pairedReads] => 707064256
[meanInsertSize] => 347.05
[meanReadDepth] => 28.27
[variantsCalled] => 6123332
[variantsFiltered] => 5860929
[snpCount] => 4142883
[snpHom] => 1929617
[snpHet] => 2213266
[indelCount] => 1726671
[insHom] => 349750
[delHom] => 474030
[insHet] => 422278
[delHet] => 513655
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ25759339
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759339/ESS_41544-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242