Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099860
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 871
                    [wgsID] => 554
                    [fwdFile] => ESS_41544_R1.fastq.gz
                    [fwdMd5] => 1183aaba1a6c2b112ce48df68de8e23d
                    [revFile] => ESS_41544_R2.fastq.gz
                    [revMd5] => c5e1e6740db681ddd7a764964d871df4
                    [rawReads] => 1004216752
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611273
                    [enaRun] => ERR14209053
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1716
                    [wgsID] => 554
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-12-25 11:10:42
                    [dateCompleted] => 2024-12-26 03:25:07
                    [bamMd5] => a6d885ec8e57d86c7d9ab0085d7fa9e0
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 727474455
                    [primaryReads] => 719679390
                    [mappedReads] => 726414846
                    [primaryMapped] => 718619781
                    [pairedReads] => 707064256
                    [meanInsertSize] => 347.05
                    [meanReadDepth] => 28.27
                    [variantsCalled] => 6123332
                    [variantsFiltered] => 5860929
                    [snpCount] => 4142883
                    [snpHom] => 1929617
                    [snpHet] => 2213266
                    [indelCount] => 1726671
                    [insHom] => 349750
                    [delHom] => 474030
                    [insHet] => 422278
                    [delHet] => 513655
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759339
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759339/ESS_41544-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242