Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190218
[wgsExptID] => 12
[Batch] => Edinburgh_2
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 36
[DateSubmitted] =>
[FastqID] => 175
[wgsID] => 165
[fwdFile] => FB_32199_R1.fastq.gz
[fwdMd5] => 7dce08fa61d1c1a65fb743b86c2fd73d
[revFile] => FB_32199_R2.fastq.gz
[revMd5] => 0d1eeb38651ce6002a099ef53f4c8cd8
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10692182
[enaRun] => ERR11284573
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 338
[wgsID] => 165
[refGenome] => cf4
[dateSubmitted] => 2023-02-24 12:20:00
[dateCompleted] => 2023-02-25 06:25:00
[bamMd5] => a7f9980a739817f37086b803d8325b64
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 871800224
[primaryReads] =>
[mappedReads] => 869903649
[primaryMapped] =>
[pairedReads] => 853298138
[meanInsertSize] => 455.67
[meanReadDepth] => 41.78
[variantsCalled] => 6407473
[variantsFiltered] => 6034461
[snpCount] => 4205238
[snpHom] =>
[snpHet] =>
[indelCount] => 1840659
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21782998
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782998/FBD_32199-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242