Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7189981
                    [wgsExptID] => 20
                    [Batch] => Edinburgh_10
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 7
                    [DateSubmitted] => 2018-10-23
                    [FastqID] => 176
                    [wgsID] => 44
                    [fwdFile] => FBD_33745_R1.fastq.gz
                    [fwdMd5] => 0158126314fe566ad148e8fd5e49386b
                    [revFile] => FBD_33745_R2.fastq.gz
                    [revMd5] => 4d3d4d2f5585b2bbf2e6d6855874bfe9
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10644419
                    [enaRun] => ERR11217528
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 76
                    [wgsID] => 44
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-10-07 13:42:00
                    [dateCompleted] => 2022-10-08 06:15:00
                    [bamMd5] => 3711c3161bd4f04f1ef78ebf65f5ddb5
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 835328511
                    [primaryReads] => 
                    [mappedReads] => 828637920
                    [primaryMapped] => 
                    [pairedReads] => 805587706
                    [meanInsertSize] => 491.21
                    [meanReadDepth] => 44.92
                    [variantsCalled] => 6340530
                    [variantsFiltered] => 5947351
                    [snpCount] => 4152651
                    [snpHom] => 1912100
                    [snpHet] => 2240551
                    [indelCount] => 1805622
                    [insHom] => 303932
                    [delHom] => 424166
                    [insHet] => 500675
                    [delHet] => 614393
                    [genomicsDB] => cf4-utility
                    [varsity] => 0
                    [enaAnalysis] => ERZ21736957
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21736957/FBD_33745-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242