Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721108
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 607
[wgsID] => 360
[fwdFile] => FBD_39493_R1.fastq.gz
[fwdMd5] => a598832fc0755bef2d50e535afae567f
[revFile] => FBD_39493_R2.fastq.gz
[revMd5] => da5b6abce738243b1956c0226d447a55
[rawReads] => 712527948
[FastqRCS] => 1
[enaExperiment] => ERX10632446
[enaRun] => ERR11203062
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 826
[wgsID] => 360
[refGenome] => cf4
[dateSubmitted] => 2023-06-20 10:02:00
[dateCompleted] => 2023-06-21 00:17:00
[bamMd5] => c9c056a203c73957ee1b40bf2afb600a
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 684908690
[primaryReads] =>
[mappedReads] => 684119340
[primaryMapped] =>
[pairedReads] => 665988776
[meanInsertSize] => 404.74
[meanReadDepth] => 34.56
[variantsCalled] => 6403939
[variantsFiltered] => 6028529
[snpCount] => 4225307
[snpHom] => 1865614
[snpHet] => 2359693
[indelCount] => 1813805
[insHom] => 303681
[delHom] => 424344
[insHet] => 506762
[delHet] => 617912
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21817126
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817126/FBD_39493-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242