Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189970
[wgsExptID] => 8
[Batch] => Oxford_5
[SeqLaboratory] => Wellcome Trust Centre for Human Genetics
[Platform] => Illumina
[InstrumentModel] => HiSeq4000
[ReadType] => 100bp:PAIRED:20X
[LibraryPrep] => WTCHG, PCR FREE
[PcrFree] => Y
[SampleCount] => 5
[DateSubmitted] =>
[FastqID] => 466
[wgsID] => 110
[fwdFile] => FCR_25382_R1.fastq.gz
[fwdMd5] => b00a1dec55dd7b961109797b147146ad
[revFile] => FCR_25382_R2.fastq.gz
[revMd5] => f58ac7b70297892d2457bd3b5258cc8b
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10825752
[enaRun] => ERR11417906
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 287
[wgsID] => 110
[refGenome] => cf4
[dateSubmitted] => 2023-02-13 11:29:00
[dateCompleted] => 2023-02-13 21:51:00
[bamMd5] => e5cef19e50916effb26fb944fd668a74
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 587019293
[primaryReads] =>
[mappedReads] => 585512638
[primaryMapped] =>
[pairedReads] => 571962054
[meanInsertSize] => 257.50
[meanReadDepth] => 20.64
[variantsCalled] => 5680425
[variantsFiltered] => 5396789
[snpCount] => 3897115
[snpHom] =>
[snpHet] =>
[indelCount] => 1505928
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21789624
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21789624/FCR_25382-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242