Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7189970
                    [wgsExptID] => 8
                    [Batch] => Oxford_5
                    [SeqLaboratory] => Wellcome Trust Centre for Human Genetics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq4000
                    [ReadType] => 100bp:PAIRED:20X
                    [LibraryPrep] => WTCHG, PCR FREE
                    [PcrFree] => Y
                    [SampleCount] => 5
                    [DateSubmitted] => 
                    [FastqID] => 466
                    [wgsID] => 110
                    [fwdFile] => FCR_25382_R1.fastq.gz
                    [fwdMd5] => b00a1dec55dd7b961109797b147146ad
                    [revFile] => FCR_25382_R2.fastq.gz
                    [revMd5] => f58ac7b70297892d2457bd3b5258cc8b
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10825752
                    [enaRun] => ERR11417906
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 287
                    [wgsID] => 110
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-02-13 11:29:00
                    [dateCompleted] => 2023-02-13 21:51:00
                    [bamMd5] => e5cef19e50916effb26fb944fd668a74
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 587019293
                    [primaryReads] => 
                    [mappedReads] => 585512638
                    [primaryMapped] => 
                    [pairedReads] => 571962054
                    [meanInsertSize] => 257.50
                    [meanReadDepth] => 20.64
                    [variantsCalled] => 5680425
                    [variantsFiltered] => 5396789
                    [snpCount] => 3897115
                    [snpHom] => 
                    [snpHet] => 
                    [indelCount] => 1505928
                    [insHom] => 
                    [delHom] => 
                    [insHet] => 
                    [delHet] => 
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21789624
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21789624/FCR_25382-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242