Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7189971
                    [wgsExptID] => 8
                    [Batch] => Oxford_5
                    [SeqLaboratory] => Wellcome Trust Centre for Human Genetics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq4000
                    [ReadType] => 100bp:PAIRED:20X
                    [LibraryPrep] => WTCHG, PCR FREE
                    [PcrFree] => Y
                    [SampleCount] => 5
                    [DateSubmitted] => 
                    [FastqID] => 467
                    [wgsID] => 111
                    [fwdFile] => FCR_25384_R1.fastq.gz
                    [fwdMd5] => a438253886637eb8dbf7b33e612e3499
                    [revFile] => FCR_25384_R2.fastq.gz
                    [revMd5] => 9635d67699a52937054ca7d19110ee03
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10825753
                    [enaRun] => ERR11417907
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 288
                    [wgsID] => 111
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-02-13 11:29:00
                    [dateCompleted] => 2023-02-13 22:43:00
                    [bamMd5] => 80a2769e3db19867506d6c75f3b099cb
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 602519442
                    [primaryReads] => 
                    [mappedReads] => 599469537
                    [primaryMapped] => 
                    [pairedReads] => 582579906
                    [meanInsertSize] => 257.70
                    [meanReadDepth] => 20.74
                    [variantsCalled] => 5770976
                    [variantsFiltered] => 5493523
                    [snpCount] => 3967669
                    [snpHom] => 
                    [snpHet] => 
                    [indelCount] => 1532487
                    [insHom] => 
                    [delHom] => 
                    [insHet] => 
                    [delHet] => 
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21789625
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21789625/FCR_25384-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242