Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190093
                    [wgsExptID] => 18
                    [Batch] => Edinburgh_8
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 17
                    [DateSubmitted] => 2017-12-12
                    [FastqID] => 177
                    [wgsID] => 309
                    [fwdFile] => FCR_34446_R1.fastq.gz
                    [fwdMd5] => b47f26485a27ee53b64757d983251177
                    [revFile] => FCR_34446_R2.fastq.gz
                    [revMd5] => 0f6af1551a620d3b01e4e985ae7fe737
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10664706
                    [enaRun] => ERR11256497
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 435
                    [wgsID] => 309
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-02-03 10:44:00
                    [dateCompleted] => 2023-02-04 07:18:00
                    [bamMd5] => 44f0d2ca107a42bce184a3ffe3e3e6dd
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 941180506
                    [primaryReads] => 
                    [mappedReads] => 933074548
                    [primaryMapped] => 
                    [pairedReads] => 892158160
                    [meanInsertSize] => 537.27
                    [meanReadDepth] => 48.60
                    [variantsCalled] => 6344065
                    [variantsFiltered] => 5869345
                    [snpCount] => 4098214
                    [snpHom] => 1967559
                    [snpHet] => 2130655
                    [indelCount] => 1781189
                    [insHom] => 313211
                    [delHom] => 434701
                    [insHet] => 480587
                    [delHet] => 588979
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21778098
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21778098/FCR_34446-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242