Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190160
[wgsExptID] => 14
[Batch] => Edinburgh_4
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 13
[DateSubmitted] =>
[FastqID] => 178
[wgsID] => 232
[fwdFile] => FL_32567_R1.fastq.gz
[fwdMd5] => 6754a7b7f21df859816ff00a85ebde22
[revFile] => FL_32567_R2.fastq.gz
[revMd5] => 760776770258323b9c6fee1551bfc506
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10679335
[enaRun] => ERR11271765
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 376
[wgsID] => 232
[refGenome] => cf4
[dateSubmitted] => 2023-03-22 11:10:00
[dateCompleted] => 2023-03-23 06:42:00
[bamMd5] => 2320fe4515462c77b2707d55eb3b1b33
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 991139146
[primaryReads] =>
[mappedReads] => 988860195
[primaryMapped] =>
[pairedReads] => 969805088
[meanInsertSize] => 483.10
[meanReadDepth] => 33.07
[variantsCalled] => 6699754
[variantsFiltered] => 6378268
[snpCount] => 4493036
[snpHom] => 1767675
[snpHet] => 2725361
[indelCount] => 1897009
[insHom] => 284952
[delHom] => 392257
[insHet] => 567116
[delHet] => 696240
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21517644
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ215/ERZ21517644/FL_32567-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242