Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190160
                    [wgsExptID] => 14
                    [Batch] => Edinburgh_4
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 13
                    [DateSubmitted] => 
                    [FastqID] => 178
                    [wgsID] => 232
                    [fwdFile] => FL_32567_R1.fastq.gz
                    [fwdMd5] => 6754a7b7f21df859816ff00a85ebde22
                    [revFile] => FL_32567_R2.fastq.gz
                    [revMd5] => 760776770258323b9c6fee1551bfc506
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10679335
                    [enaRun] => ERR11271765
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 376
                    [wgsID] => 232
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-03-22 11:10:00
                    [dateCompleted] => 2023-03-23 06:42:00
                    [bamMd5] => 2320fe4515462c77b2707d55eb3b1b33
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 991139146
                    [primaryReads] => 
                    [mappedReads] => 988860195
                    [primaryMapped] => 
                    [pairedReads] => 969805088
                    [meanInsertSize] => 483.10
                    [meanReadDepth] => 33.07
                    [variantsCalled] => 6699754
                    [variantsFiltered] => 6378268
                    [snpCount] => 4493036
                    [snpHom] => 1767675
                    [snpHet] => 2725361
                    [indelCount] => 1897009
                    [insHom] => 284952
                    [delHom] => 392257
                    [insHet] => 567116
                    [delHet] => 696240
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21517644
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ215/ERZ21517644/FL_32567-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242